Kocuria palustris str. CD07_3

Gram-positiveAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Kocuria

Description

Kocuria palustris str. CD07_3 is a Gram-positive, aerobic bacterium characterized by its ability to thrive in oxygen-rich environments. As a member of the genus Kocuria, this strain exhibits the typical morphological and physiological traits associated with Gram-positive bacteria, including a thick peptidoglycan layer in its cell wall, which contributes to its structural integrity and resistance to certain environmental stresses. The aerobic nature of K. palustris str. CD07_3 indicates its reliance on oxygen for metabolism, which may suggest a role in biogeochemical cycles where oxygen is present. This metabolic requirement could enable the strain to participate in the degradation of organic materials in oxygenated environments, potentially influencing nutrient cycling and microbial community dynamics in its habitat. Furthermore, the presence of Kocuria species in various environments, including soil and water, points to their adaptability and ecological significance. While specific ecological interactions and the broader impact of K. palustris str. CD07_3 on its environment remain to be explored, its aerobic metabolism suggests it may play a role in maintaining the balance of microbial communities in habitats where oxygen levels fluctuate, thus contributing to ecosystem resilience.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusKocuria
SpeciesKocuria palustris
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kocuria palustris str. CD07_3

Accession NumberLQBJ00000000.1

Gene Summary

Adenine Count

417034 bp

Thymine Count

421300 bp

Guanine Count

998127 bp

Cytosine Count

996945 bp

Genome Length

2833425 bp

Protein-coding Genes

2365 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
glycogen branching proteinAVL60_11760Q47SE7-462 - 4385142685.0
trehalose synthaseAVL60_11765A0R6E0-4433 - 619967183.7
alpha-1,4-glucan--maltose-1-phosphate maltosyltransferaseAVL60_11770Q9L1K2-6305 - 832375712.6
glycogen phosphorylaseAVL60_11775P9WMW0+8593 - 1117895185.7
glycogen debranching enzymeAVL60_11780Not Available-11231 - 1345381005.0
rna methyltransferaseAVL60_11785Q1B2P4-13446 - 1444435744.6
cysteine--trna ligaseAVL60_11790B2GFS8-14553 - 1599552768.8
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseAVL60_11795B8HCR6-16006 - 1651817397.4
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseAVL60_11800B2HJ23-16521 - 1732428519.1
card family transcriptional regulatorAVL60_11805P9WJG2-17336 - 1781817984.6

Displaying genes 1 – 10 of 2416 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

489 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000419S-formylmycothiolC18H30N2O13SChemical structure of S-formylmycothiolNot available
Average514.5Da
Monoisotopic514.146860208Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 489 metabolites