Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. XPD3002 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. XPD3002
Accession NumberFPJT00000000.1
Gene Summary
Adenine Count
1004859 bp
Thymine Count
1005118 bp
Guanine Count
817425 bp
Cytosine Count
810002 bp
Genome Length
3642793 bp
Protein-coding Genes
3109 genes
Non-Coding Genes
138 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| leucine rich repeat-containing protein | SAMN04487832_103123 | Not Available | - | 893451 - 898865 | 197029.0 |
| carbohydrate binding domain-containing protein | SAMN04487832_103124 | Not Available | + | 899292 - 900833 | 56171.0 |
| hypothetical protein | SAMN04487832_103125 | Not Available | + | 901017 - 903590 | 97865.3 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04487832_103126 | Not Available | + | 903757 - 904311 | 21338.5 |
| hypothetical protein | SAMN04487832_103127 | Not Available | + | 904298 - 906676 | 89548.4 |
| predicted n-acetyltransferase yhbs | SAMN04487832_103128 | Not Available | - | 906841 - 907497 | 25506.3 |
| flavodoxin | SAMN04487832_103129 | Not Available | - | 907724 - 908479 | 27456.9 |
| arabinan endo-1,5-alpha-l-arabinosidase | SAMN04487832_103130 | Not Available | - | 908750 - 911500 | 100512.0 |
| ll-diaminopimelate aminotransferase apoenzyme | SAMN04487832_103131 | Not Available | - | 911727 - 912926 | 44826.7 |
| diaminopimelate epimerase | SAMN04487832_103132 | Not Available | - | 912938 - 913774 | 30846.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.