Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. XPD3002 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. XPD3002
Accession NumberFPJT00000000.1
Gene Summary
Adenine Count
1004859 bp
Thymine Count
1005118 bp
Guanine Count
817425 bp
Cytosine Count
810002 bp
Genome Length
3642793 bp
Protein-coding Genes
3109 genes
Non-Coding Genes
138 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter substrate-binding protein, cut1 family (tc 3.a.1.1.-) | SAMN04487832_102249 | Not Available | - | 664418 - 667327 | 108110.0 |
| threonyl-trna synthetase | SAMN04487832_102250 | Not Available | - | 667638 - 669578 | 74005.7 |
| rep element-mobilizing transposase rayt | SAMN04487832_102251 | Not Available | - | 669581 - 670132 | 21760.9 |
| hypothetical protein | SAMN04487832_102252 | Not Available | - | 670134 - 670514 | 14425.9 |
| transcriptional regulator, card family | SAMN04487832_102254 | Not Available | - | 670861 - 671367 | 19802.4 |
| imp dehydrogenase | SAMN04487832_102255 | Not Available | - | 671573 - 673045 | 52313.7 |
| leucine rich repeat-containing protein | SAMN04487832_102256 | Not Available | - | 673328 - 674524 | 42437.2 |
| imidazolonepropionase | SAMN04487832_102257 | Not Available | - | 674524 - 675699 | 42912.4 |
| shikimate kinase | SAMN04487832_102258 | Not Available | - | 675712 - 676212 | 18088.8 |
| shikimate dehydrogenase | SAMN04487832_102259 | Not Available | - | 676228 - 677061 | 29946.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.