Ruminococcus sp. XPD3002

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. XPD3002 is a Gram-positive, nonsporulating coccus that thrives as an anaerobic, chemoheterotrophic organism, primarily residing in the intestinal microflora of animals. This microbe exhibits an optimal growth temperature of 39.0°C, suggesting a preference for the warm, stable environment typically found in the intestines of host organisms. As a member of the gut microbiota, Ruminococcus sp. XPD3002 plays a critical role in the digestion of complex carbohydrates, contributing to the overall metabolic processes within the intestinal ecosystem. Its ability to function in an anaerobic environment aligns with the conditions prevalent in the intestines, where oxygen levels are generally low. The presence of Ruminococcus sp. XPD3002 in the gut may support the fermentation of dietary fibers, resulting in the production of short-chain fatty acids, which are beneficial for both host health and microbial community dynamics. This species underscores the importance of anaerobic, chemoheterotrophic bacteria in maintaining gut health and facilitating nutrient absorption in animal hosts, highlighting the intricate relationships between host organisms and their resident microbial communities.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. XPD3002
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. XPD3002
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Ruminococcus sp. XPD3002

Accession NumberFPJT00000000.1

Gene Summary

Adenine Count

1004859 bp

Thymine Count

1005118 bp

Guanine Count

817425 bp

Cytosine Count

810002 bp

Genome Length

3642793 bp

Protein-coding Genes

3109 genes

Non-Coding Genes

138 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5-methylcytosine-specific restriction enzyme aSAMN04487832_102175Not Available-582100 - 58249215358.8
c-terminal processing protease ctpa/prc, contains a pdz domainSAMN04487832_102176Not Available-583377 - 58512565219.5
hypothetical proteinSAMN04487832_102177Not Available+585719 - 5859709703.56
phage-related proteinSAMN04487832_102178Not Available+586990 - 58867560693.7
pld-like domain-containing proteinSAMN04487832_102179Not Available-588679 - 58980943706.2
protein-tyrosine phosphataseSAMN04487832_102194Not Available+603617 - 60407817189.6
hypothetical proteinSAMN04487832_102195Not Available+604075 - 6042606978.14
16s rrna pseudouridine516 synthaseSAMN04487832_102196Not Available+604260 - 60487423496.3
putative efflux protein, mate familySAMN04487832_102197Not Available+604979 - 60632848166.3
transcriptional regulator, tetr familySAMN04487832_102198Not Available-606398 - 60700923090.9

Displaying genes 591 – 600 of 3247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites