Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. XPD3002 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. XPD3002
Accession NumberFPJT00000000.1
Gene Summary
Adenine Count
1004859 bp
Thymine Count
1005118 bp
Guanine Count
817425 bp
Cytosine Count
810002 bp
Genome Length
3642793 bp
Protein-coding Genes
3109 genes
Non-Coding Genes
138 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phosphate acetyltransferase | SAMN04487832_11842 | Not Available | - | 3169366 - 3170382 | 35800.0 |
| murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domain | SAMN04487832_11843 | Not Available | - | 3170584 - 3171393 | 28538.6 |
| hypothetical protein | SAMN04487832_11844 | Not Available | + | 3171690 - 3172373 | 24456.0 |
| hypothetical protein | SAMN04487832_11845 | Not Available | + | 3172400 - 3172894 | 18333.6 |
| putative transcriptional regulator | SAMN04487832_11846 | Not Available | + | 3172906 - 3173124 | 7970.69 |
| ferredoxin-dependent bilin reductase | SAMN04487832_11847 | Not Available | - | 3173240 - 3174043 | 30447.9 |
| dna repair protein radc | SAMN04487832_11848 | Not Available | + | 3174364 - 3175059 | 26568.9 |
| dna repair protein radc | SAMN04487832_11849 | Not Available | + | 3175059 - 3175730 | 25005.9 |
| trna(ile)-lysidine synthase tils/mesj | SAMN04487832_11850 | Not Available | + | 3175811 - 3176938 | 43462.3 |
| penicillin-binding protein 2 | SAMN04487832_11851 | Not Available | - | 3176993 - 3179110 | 77294.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.