Ruminococcus sp. XPD3002

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. XPD3002 is a Gram-positive, nonsporulating coccus that thrives as an anaerobic, chemoheterotrophic organism, primarily residing in the intestinal microflora of animals. This microbe exhibits an optimal growth temperature of 39.0°C, suggesting a preference for the warm, stable environment typically found in the intestines of host organisms. As a member of the gut microbiota, Ruminococcus sp. XPD3002 plays a critical role in the digestion of complex carbohydrates, contributing to the overall metabolic processes within the intestinal ecosystem. Its ability to function in an anaerobic environment aligns with the conditions prevalent in the intestines, where oxygen levels are generally low. The presence of Ruminococcus sp. XPD3002 in the gut may support the fermentation of dietary fibers, resulting in the production of short-chain fatty acids, which are beneficial for both host health and microbial community dynamics. This species underscores the importance of anaerobic, chemoheterotrophic bacteria in maintaining gut health and facilitating nutrient absorption in animal hosts, highlighting the intricate relationships between host organisms and their resident microbial communities.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. XPD3002
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. XPD3002
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Ruminococcus sp. XPD3002

Accession NumberFPJT00000000.1

Gene Summary

Adenine Count

1004859 bp

Thymine Count

1005118 bp

Guanine Count

817425 bp

Cytosine Count

810002 bp

Genome Length

3642793 bp

Protein-coding Genes

3109 genes

Non-Coding Genes

138 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
large subunit ribosomal protein l2SAMN04487832_11746Not Available-3084100 - 308493330770.3
large subunit ribosomal protein l23SAMN04487832_11747Not Available-3085001 - 308529410832.3
large subunit ribosomal protein l4SAMN04487832_11748Not Available-3085294 - 308591722545.3
large subunit ribosomal protein l3SAMN04487832_11749Not Available-3085935 - 308656722241.1
small subunit ribosomal protein s10SAMN04487832_11750Not Available-3086677 - 308699111622.3
lipocalin-like domain-containing proteinSAMN04487832_11751Not Available+3087573 - 308824423886.5
dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domainSAMN04487832_11752Not Available+3088625 - 308933227064.6
signal transduction histidine kinaseSAMN04487832_11753Not Available+3089545 - 309100854863.9
serine protease doSAMN04487832_11754Not Available+3091021 - 309244251608.6
putative membrane protein, tigr04086 familySAMN04487832_11755Not Available-3092436 - 309283713795.4

Displaying genes 2681 – 2690 of 3247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites