Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. XPD3002 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. XPD3002
Accession NumberFPJT00000000.1
Gene Summary
Adenine Count
1004859 bp
Thymine Count
1005118 bp
Guanine Count
817425 bp
Cytosine Count
810002 bp
Genome Length
3642793 bp
Protein-coding Genes
3109 genes
Non-Coding Genes
138 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| large subunit ribosomal protein l2 | SAMN04487832_11746 | Not Available | - | 3084100 - 3084933 | 30770.3 |
| large subunit ribosomal protein l23 | SAMN04487832_11747 | Not Available | - | 3085001 - 3085294 | 10832.3 |
| large subunit ribosomal protein l4 | SAMN04487832_11748 | Not Available | - | 3085294 - 3085917 | 22545.3 |
| large subunit ribosomal protein l3 | SAMN04487832_11749 | Not Available | - | 3085935 - 3086567 | 22241.1 |
| small subunit ribosomal protein s10 | SAMN04487832_11750 | Not Available | - | 3086677 - 3086991 | 11622.3 |
| lipocalin-like domain-containing protein | SAMN04487832_11751 | Not Available | + | 3087573 - 3088244 | 23886.5 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04487832_11752 | Not Available | + | 3088625 - 3089332 | 27064.6 |
| signal transduction histidine kinase | SAMN04487832_11753 | Not Available | + | 3089545 - 3091008 | 54863.9 |
| serine protease do | SAMN04487832_11754 | Not Available | + | 3091021 - 3092442 | 51608.6 |
| putative membrane protein, tigr04086 family | SAMN04487832_11755 | Not Available | - | 3092436 - 3092837 | 13795.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.