Ruminococcus sp. XPD3002

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus sp. XPD3002 is a Gram-positive, nonsporulating coccus that thrives as an anaerobic, chemoheterotrophic organism, primarily residing in the intestinal microflora of animals. This microbe exhibits an optimal growth temperature of 39.0°C, suggesting a preference for the warm, stable environment typically found in the intestines of host organisms. As a member of the gut microbiota, Ruminococcus sp. XPD3002 plays a critical role in the digestion of complex carbohydrates, contributing to the overall metabolic processes within the intestinal ecosystem. Its ability to function in an anaerobic environment aligns with the conditions prevalent in the intestines, where oxygen levels are generally low. The presence of Ruminococcus sp. XPD3002 in the gut may support the fermentation of dietary fibers, resulting in the production of short-chain fatty acids, which are beneficial for both host health and microbial community dynamics. This species underscores the importance of anaerobic, chemoheterotrophic bacteria in maintaining gut health and facilitating nutrient absorption in animal hosts, highlighting the intricate relationships between host organisms and their resident microbial communities.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus sp. XPD3002
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Ruminococcus sp. XPD3002
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Ruminococcus sp. XPD3002

Accession NumberFPJT00000000.1

Gene Summary

Adenine Count

1004859 bp

Thymine Count

1005118 bp

Guanine Count

817425 bp

Cytosine Count

810002 bp

Genome Length

3642793 bp

Protein-coding Genes

3109 genes

Non-Coding Genes

138 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
diguanylate cyclase (ggdef) domain-containing proteinSAMN04487832_11619Not Available-2992656 - 299384943792.9
ribose transport system substrate-binding proteinSAMN04487832_11620Not Available-2993862 - 299487535789.3
zinc-ribbon domain-containing proteinSAMN04487832_11621Not Available+2995310 - 299635939384.7
protein kinase domain-containing proteinSAMN04487832_11622Not Available+2996414 - 299775750169.2
uncharacterized conserved protein yegl, contains vwa domain of tery typeSAMN04487832_11623Not Available+2997810 - 299865830965.7
protein phosphatase 2cSAMN04487832_11624Not Available+2998698 - 299964835517.5
diguanylate cyclase (ggdef) domain-containing proteinSAMN04487832_11625Not Available+2999667 - 300069237799.5
cytidine and deoxycytidylate deaminase zinc-binding regionSAMN04487832_11626Not Available+3000800 - 300216150048.8
hypothetical proteinSAMN04487832_11627Not Available+3002428 - 300295520001.9
rhamnogalacturonan endolyaseSAMN04487832_11628Not Available+3003207 - 3005987100144.0

Displaying genes 2591 – 2600 of 3247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites