Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. XPD3002 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. XPD3002
Accession NumberFPJT00000000.1
Gene Summary
Adenine Count
1004859 bp
Thymine Count
1005118 bp
Guanine Count
817425 bp
Cytosine Count
810002 bp
Genome Length
3642793 bp
Protein-coding Genes
3109 genes
Non-Coding Genes
138 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| diguanylate cyclase (ggdef) domain-containing protein | SAMN04487832_11619 | Not Available | - | 2992656 - 2993849 | 43792.9 |
| ribose transport system substrate-binding protein | SAMN04487832_11620 | Not Available | - | 2993862 - 2994875 | 35789.3 |
| zinc-ribbon domain-containing protein | SAMN04487832_11621 | Not Available | + | 2995310 - 2996359 | 39384.7 |
| protein kinase domain-containing protein | SAMN04487832_11622 | Not Available | + | 2996414 - 2997757 | 50169.2 |
| uncharacterized conserved protein yegl, contains vwa domain of tery type | SAMN04487832_11623 | Not Available | + | 2997810 - 2998658 | 30965.7 |
| protein phosphatase 2c | SAMN04487832_11624 | Not Available | + | 2998698 - 2999648 | 35517.5 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN04487832_11625 | Not Available | + | 2999667 - 3000692 | 37799.5 |
| cytidine and deoxycytidylate deaminase zinc-binding region | SAMN04487832_11626 | Not Available | + | 3000800 - 3002161 | 50048.8 |
| hypothetical protein | SAMN04487832_11627 | Not Available | + | 3002428 - 3002955 | 20001.9 |
| rhamnogalacturonan endolyase | SAMN04487832_11628 | Not Available | + | 3003207 - 3005987 | 100144.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.