Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. XPD3002 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. XPD3002
Accession NumberFPJT00000000.1
Gene Summary
Adenine Count
1004859 bp
Thymine Count
1005118 bp
Guanine Count
817425 bp
Cytosine Count
810002 bp
Genome Length
3642793 bp
Protein-coding Genes
3109 genes
Non-Coding Genes
138 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| elongation factor g | SAMN04487832_11561 | Not Available | + | 2963430 - 2965511 | 74793.6 |
| cellulose binding domain-containing protein | SAMN04487832_11562 | Not Available | - | 2965831 - 2968548 | 99436.8 |
| crispr-associated protein cas2 | SAMN04487832_1161 | Not Available | - | 2969576 - 2969866 | 11049.4 |
| crispr-associated protein, cas1 family | SAMN04487832_1162 | Not Available | - | 2969871 - 2970902 | 39383.4 |
| crispr-associated exonuclease, cas4 family | SAMN04487832_1163 | Not Available | - | 2970899 - 2971564 | 25620.7 |
| crispr-associated protein csd2 | SAMN04487832_1164 | Not Available | - | 2971564 - 2972436 | 32904.7 |
| crispr-associated protein csd1 | SAMN04487832_1165 | Not Available | - | 2972437 - 2974293 | 70618.4 |
| crispr-associated protein cas5d | SAMN04487832_1166 | Not Available | - | 2974280 - 2975029 | 28949.6 |
| crispr-associated endonuclease/helicase cas3 | SAMN04487832_1167 | Not Available | - | 2975044 - 2977368 | 87795.5 |
| beta-xylosidase, gh43 family | SAMN04487832_1168 | Not Available | - | 2977823 - 2980726 | 106852.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.