Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Eubacteriales
Family
Oscillospiraceae
Genus
Ruminococcus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Eubacteriales |
| Family | Oscillospiraceae |
| Genus | Ruminococcus |
| Species | Ruminococcus sp. XPD3002 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Cocci |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 39 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Ruminococcus sp. XPD3002
Accession NumberFPJT00000000.1
Gene Summary
Adenine Count
1004859 bp
Thymine Count
1005118 bp
Guanine Count
817425 bp
Cytosine Count
810002 bp
Genome Length
3642793 bp
Protein-coding Genes
3109 genes
Non-Coding Genes
138 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| zinc transporter, zip family | SAMN04487832_1078 | Not Available | - | 1802791 - 1803570 | 27119.3 |
| site-specific recombinase xerd | SAMN04487832_1079 | Not Available | + | 1803814 - 1804806 | 38116.6 |
| uncharacterized membrane protein ydbt, contains bph2 (pleckstrin homology) domain | SAMN04487832_10710 | Not Available | - | 1804850 - 1806319 | 55287.9 |
| ph domain-containing protein | SAMN04487832_10711 | Not Available | - | 1806323 - 1806763 | 16724.6 |
| alanine or glycine:cation symporter, agcs family | SAMN04487832_10712 | Not Available | + | 1806887 - 1808134 | 44011.1 |
| hypothetical protein | SAMN04487832_10713 | Not Available | - | 1808379 - 1808537 | 5999.07 |
| ribonuclease j | SAMN04487832_10714 | Not Available | + | 1808706 - 1810556 | 67887.0 |
| c-di-amp phosphodiesterase, consists of a ggdef-like and dhh domains | SAMN04487832_10715 | Not Available | + | 1810607 - 1812583 | 72903.4 |
| large subunit ribosomal protein l9 | SAMN04487832_10716 | Not Available | + | 1812602 - 1813048 | 15764.0 |
| replicative dna helicase | SAMN04487832_10717 | Not Available | + | 1813056 - 1814408 | 50398.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.