Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus
Gene Summary
Adenine Count
1527061 bp
Thymine Count
1544992 bp
Guanine Count
1154572 bp
Cytosine Count
1125574 bp
Genome Length
5352199 bp
Protein-coding Genes
4433 genes
Non-Coding Genes
89 genes
# of Chromosomes/Plasmids
10
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trna (guanosine(46)-n7)-methyltransferase trmb | EAJ12_07475 | Not Available | + | 1772982 - 1773740 | 29773.6 |
| mrp family atp-binding protein | EAJ12_07480 | Not Available | + | 1773751 - 1774851 | 39645.1 |
| hypothetical protein | EAJ12_07485 | Not Available | + | 1775370 - 1775798 | 16662.0 |
| beta-galactosidase | EAJ12_07490 | Not Available | - | 1776558 - 1778597 | 78046.9 |
| port family protein | EAJ12_07495 | Not Available | - | 1778894 - 1779571 | 25316.8 |
| hypothetical protein | EAJ12_07505 | Not Available | + | 1780056 - 1780244 | 7146.55 |
| Trna-asp | Not Available | Not Available | + | 1781188 - 1781264 | Not Available |
| formyltetrahydrofolate deformylase | EAJ12_07520 | Not Available | + | 1781529 - 1782386 | 33270.5 |
| imidazole glycerol phosphate synthase subunit hish | EAJ12_07525 | Not Available | + | 1782386 - 1782976 | 22270.8 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | EAJ12_07530 | Not Available | + | 1783018 - 1783737 | 26636.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.

