Phocaeicola vulgatus

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus is a Gram-positive, anaerobic rod-shaped bacterium predominantly found in host-associated environments. This microbe typically exists as single cells rather than in clusters or chains, which is characteristic of its morphological traits. As an anaerobe, P. vulgatus thrives in environments devoid of oxygen, suggesting its adaptation to the anaerobic conditions often present in host-associated habitats, such as the gastrointestinal tract of various animals. The ability of P. vulgatus to maintain its viability and metabolic activity in low-oxygen environments highlights its potential role in the microbial communities that inhabit these niches. Its presence may be significant in the context of host-microbe interactions, contributing to the complex dynamics of gut microbiota, although specific functional roles and interactions require further investigation. Overall, P. vulgatus exemplifies the diversity of anaerobic bacteria associated with host organisms, emphasizing the intricate relationships that exist within microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

1527061 bp

Thymine Count

1544992 bp

Guanine Count

1154572 bp

Cytosine Count

1125574 bp

Genome Length

5352199 bp

Protein-coding Genes

4433 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

10

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
trna (guanosine(46)-n7)-methyltransferase trmbEAJ12_07475Not Available+1772982 - 177374029773.6
mrp family atp-binding proteinEAJ12_07480Not Available+1773751 - 177485139645.1
hypothetical proteinEAJ12_07485Not Available+1775370 - 177579816662.0
beta-galactosidaseEAJ12_07490Not Available-1776558 - 177859778046.9
port family proteinEAJ12_07495Not Available-1778894 - 177957125316.8
hypothetical proteinEAJ12_07505Not Available+1780056 - 17802447146.55
Trna-aspNot AvailableNot Available+1781188 - 1781264Not Available
formyltetrahydrofolate deformylaseEAJ12_07520Not Available+1781529 - 178238633270.5
imidazole glycerol phosphate synthase subunit hishEAJ12_07525Not Available+1782386 - 178297622270.8
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseEAJ12_07530Not Available+1783018 - 178373726636.3

Displaying genes 1451 – 1460 of 34247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites