Phocaeicola vulgatus str. CL10T00C06

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus str. CL10T00C06 is a Gram-positive, rod-shaped bacterium that exists as single cells and is classified as an anaerobe, indicating its metabolic processes occur in the absence of oxygen. This strain is notably host-associated, suggesting a potential symbiotic relationship with its host organism. As an anaerobic bacterium, P. vulgatus str. CL10T00C06 may play a crucial role in various biochemical processes within its host, potentially contributing to gut health, nutrient absorption, or fermentation of dietary fibers. The specific habitat of this strain underscores its ecological significance, as host-associated microbes often participate in complex interactions within the microbiome, influencing both host physiology and microbial community dynamics. Understanding the traits of P. vulgatus str. CL10T00C06 enhances our knowledge of the functional diversity found in anaerobic bacteria and their contributions to the overall health of the microbiological ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus str. CL10T00C06
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus str. CL10T00C06


Gene Summary

Adenine Count

1420826 bp

Thymine Count

1424215 bp

Guanine Count

1046299 bp

Cytosine Count

1024853 bp

Genome Length

4918368 bp

Protein-coding Genes

4025 genes

Non-Coding Genes

85 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
glutaconyl-coa decarboxylase subunit betaCK234_02176Not Available-2813176 - 281433640880.4
biotin carboxyl carrier protein of acetyl-coa carboxylaseCK234_02177Not Available-2814338 - 281476915152.5
oxaloacetate decarboxylase, gamma chainCK234_02178Not Available-2814793 - 281572234102.0
putative propionyl-coa carboxylase beta chain 5CK234_02179Not Available-2815750 - 281730356473.9
methylmalonyl-coa epimeraseCK234_02180Not Available-2817406 - 281781914910.1
acetyltransferase (gnat) domain proteinCK234_02181Not Available-2817976 - 281895638358.9
f420 biosynthesis protein fbib, c-terminal domainCK234_02182Not Available+2819044 - 281958020051.4
hypothetical proteinCK234_02183Not Available+2819583 - 281990911882.3
protein of unknown function (duf2520)CK234_02184Not Available+2819909 - 282071529767.2
putative 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase, kdsc-likeCK234_02185Not Available+2820721 - 282123919125.2

Displaying genes 2201 – 2210 of 4110 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites