Bacteroides fragilis

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis is a Gram-negative, rod-shaped bacterium that thrives as an obligate anaerobe, functioning primarily as a chemoheterotroph, utilizing organic compounds for energy production. This microbe is predominantly found in the human gastrointestinal tract, where it plays a crucial role in maintaining gut health and homeostasis.As an obligate anaerobe, B. fragilis cannot survive in the presence of oxygen, which is essential for its metabolic processes. It metabolizes nutrients through fermentation pathways, breaking down complex carbohydrates and proteins to produce short-chain fatty acids, which are beneficial for colon health and serve as energy sources for intestinal cells. This ability to thrive in an oxygen-free environment contributes to the microbe's prevalence in the human gut, where it can constitute a significant portion of the gut microbiota. Bacteroides fragilis has a unique shape characterized by its rod-like structure, which aids in its adaptability and survival within the intestines. This bacterium is not only found in humans but can also be present in various other mammals, highlighting its role in the broader ecosystem of gut microbiomes across species. Moreover, B. fragilis is notable for its potential to influence human health positively and negatively. While it contributes to the digestion of complex polysaccharides and supports the immune system, it can also lead to opportunistic infections if it enters sterile areas of the body, such as during abdominal surgery or in cases of perforated bowel. Its dual nature underscores the delicate balance of microbial communities within the body and the potential implications for health and disease. The study of Bacteroides fragilis continues to reveal insights into the complex relationships between gut microbiota and host health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis

Accession NumberQRZH00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4364 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
response regulatorDWW08_23380Not Available-5315327 - 531697663306.8
is1380 family transposase is613DWW08_23385Not Available-5317170 - 531845649574.1
rhs repeat proteinDWW08_23390Not Available+5318594 - 531988648943.6
duf4375 domain-containing proteinDWW08_23395Not Available+5319959 - 532041117823.1
hypothetical proteinDWW08_23400Not Available+5320465 - 532088416800.9
dna primaseDWW08_23405Not Available+5321026 - 532141214892.6
plasmid mobilization relaxosome protein mobcDWW08_23410Not Available+5321560 - 53217206116.38
helix-turn-helix domain-containing proteinDWW08_23415Not Available+5322012 - 532232011800.4
hypothetical proteinDWW08_23425Not Available+5323123 - 53233117107.71

Displaying genes 9061 – 9069 of 9069 in total

Pathways

23 pathways

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da

Displaying 1–10 of 88 metabolites