Bacteroides fragilis str. DCMOUH0042B

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. DCMOUH0042B is a Gram-negative, rod-shaped bacterium that exists primarily as single cells and is classified as an anaerobe. This strain thrives optimally at a temperature of 37.0°C, aligning with the physiological conditions commonly found in the human body, which is its natural habitat. As a chemoorganotroph, Bacteroides fragilis str. DCMOUH0042B metabolizes organic compounds to derive energy, playing a crucial role in the degradation of complex carbohydrates within the host-associated environment. The presence of Bacteroides fragilis species in the gut microbiota is essential for maintaining intestinal health, particularly in the degradation of dietary fibers and other organic materials that are not readily digestible by the host. This metabolic capability may contribute to the overall balance of microbial communities in the gastrointestinal tract, influencing nutrient absorption and host metabolism. Furthermore, the unique anaerobic nature of this strain suggests adaptations that allow it to thrive in low-oxygen environments, which is characteristic of the gut ecosystem. Understanding the specific roles and interactions of Bacteroides fragilis str. DCMOUH0042B within its ecological niche could provide insights into its contributions to host health and the potential impacts of dysbiosis in gut microbiota.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. DCMOUH0042B
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityHuman

Genome Summary

Bacteroides fragilis str. DCMOUH0042B

Accession NumberNZ_CP036550.1

Gene Summary

Adenine Count

1453684 bp

Thymine Count

1458792 bp

Guanine Count

1112819 bp

Cytosine Count

1115962 bp

Genome Length

5141257 bp

Protein-coding Genes

4090 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
sh3 domain-containing proteinHR50_RS07020Not Available-1638531 - 1641326105862.0
hsp70 family proteinHR50_RS07025Not Available-1641354 - 164294358632.2
nucleotide exchange factor grpeHR50_RS07030Not Available-1642983 - 164383132860.4
is1380-like element is613 family transposaseHR50_RS07035Not Available+1644024 - 164531049574.1
6-bladed beta-propellerHR50_RS07040Not Available+1646488 - 164764843851.5
ump kinaseHR50_RS07050Not Available-1647895 - 164860525628.3
mate family efflux transporterHR50_RS07055Not Available-1648654 - 164996748849.9
family 16 glycosylhydrolaseHR50_RS07065Not Available+1650167 - 165148950638.1
tetratricopeptide repeat proteinHR50_RS07070Not Available+1651604 - 165228726252.6
zinc-dependent metalloproteinase lipoproteinHR50_RS07075Not Available-1652311 - 165362148881.8

Displaying genes 1291 – 1300 of 4183 in total

Pathways

23 pathways

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites