Shigella sonnei

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella sonnei is a gram-negative, rod-shaped bacterium that thrives in a temperature range of 25-37°C, falling under the category of mesophiles. As a chemoheterotroph, it obtains its energy by breaking down organic compounds, specifically requiring a supply of nutrients from its environment. S. sonnei's energy production involves the breakdown of glucose and other carbon sources through fermentation, involving the conversion of glucose into lactate and ethanol as byproducts. The bacterium's cell wall is characterized by a gram-negative staining pattern, indicating the presence of a thin peptidoglycan layer and an outer membrane. Its rod-shaped morphology allows it to fit within the tight spaces of the human gut, where it can colonize and reproduce. S. sonnei is known to infect various body sites, including the gastrointestinal tract, urinary tract, and genital tract, making it a relevant pathogen in both humans and animals. Its ability to infect multiple sites is attributed to its ability to survive and replicate in a variety of environments. In terms of oxygen preference, S. sonnei is an obligate anaerobe, meaning it cannot tolerate oxygen and grows best in the absence of oxygen. This is reflected in its ability to inhibit the growth of other microorganisms that require oxygen, allowing it to dominate the environment. Shigella sonnei is often referred to as the most common cause of reported Shigella infections worldwide, with a global distribution. Its mode of transmission is primarily through the fecal-oral route, where infected individuals contaminate their environment with the bacterium, which is then ingested by others.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella sonnei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella sonnei
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella sonnei

Accession NumberCXEP00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4610 genes

Non-Coding Genes

148 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative dna-binding response regulatorEPS31_01715Not Available+371049 - 37177127657.5
duf1508 domain-containing proteinEPS31_01720Not Available+371951 - 37228311994.9
u32 family peptidaseEPS31_01725Not Available+372431 - 37379251145.1
AttlNot AvailableNot Available+373937 - 373966Not Available
Putative positive regulator of late gene transcriptionEPS31_01730Not Available-374066 - 3743209656.61
Tail proteinEPS31_01735Not Available-374366 - 37552942777.0
Tail proteinEPS31_01740Not Available-375529 - 37600817523.3
Tail length determinatorEPS31_01745Not Available-376023 - 37847086674.0
Putative phage tail proteinEPS31_01750Not Available-378463 - 3785824560.46
Tail proteinEPS31_01755Not Available-378615 - 3788909664.92

Displaying genes 1 – 10 of 24990 in total

Pathways

16 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

65 records
Metabolite IDMetabolite nameStructureCAS number
BASm0018974Tetradecenoate (N-C14:1)C14H25O2Chemical structure of Tetradecenoate (N-C14:1)NULL
Average225.3471Da
Monoisotopic225.185455044Da
BASm0019191PE(16:1(9Z)/18:1(9Z))C39H74NO8PChemical structure of PE(16:1(9Z)/18:1(9Z))NULL
Average715.994Da
Monoisotopic715.515205345Da
BASm0019198PS(18:0/18:1(9Z))C42H80NO10PChemical structure of PS(18:0/18:1(9Z))NULL
Average790.073Da
Monoisotopic789.551984778Da
BASm0019212PS(16:0/18:1(9Z))C40H76NO10PChemical structure of PS(16:0/18:1(9Z))NULL
Average762.019Da
Monoisotopic761.520684649Da
BASm0019214PS(16:1(9Z)/18:1(9Z))C40H74NO10PChemical structure of PS(16:1(9Z)/18:1(9Z))NULL
Average760.003Da
Monoisotopic759.505034585Da
BASm0020025myristoyl-CoAC35H62N7O17P3SChemical structure of myristoyl-CoA3130-72-1
Average977.89Da
Monoisotopic977.313573819Da
BASm0020027oleoyl-CoAC39H68N7O17P3SChemical structure of oleoyl-CoA1716-06-9
Average1031.98Da
Monoisotopic1031.360524011Da
BASm0020161PA(12:0/16:0)C31H61O8PChemical structure of PA(12:0/16:0)NULL
Average592.785Da
Monoisotopic592.41040544Da
BASm0020162PA(12:0/16:1(9Z))C31H59O8PChemical structure of PA(12:0/16:1(9Z))NULL
Average590.7691Da
Monoisotopic590.394755376Da
BASm0020164PA(14:1(9Z)/16:0)C33H63O8PChemical structure of PA(14:1(9Z)/16:0)NULL
Average618.8223Da
Monoisotopic618.426055504Da

Displaying 41–50 of 65 metabolites