Shigella sonnei

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella sonnei is a gram-negative, rod-shaped bacterium that thrives in a temperature range of 25-37°C, falling under the category of mesophiles. As a chemoheterotroph, it obtains its energy by breaking down organic compounds, specifically requiring a supply of nutrients from its environment. S. sonnei's energy production involves the breakdown of glucose and other carbon sources through fermentation, involving the conversion of glucose into lactate and ethanol as byproducts. The bacterium's cell wall is characterized by a gram-negative staining pattern, indicating the presence of a thin peptidoglycan layer and an outer membrane. Its rod-shaped morphology allows it to fit within the tight spaces of the human gut, where it can colonize and reproduce. S. sonnei is known to infect various body sites, including the gastrointestinal tract, urinary tract, and genital tract, making it a relevant pathogen in both humans and animals. Its ability to infect multiple sites is attributed to its ability to survive and replicate in a variety of environments. In terms of oxygen preference, S. sonnei is an obligate anaerobe, meaning it cannot tolerate oxygen and grows best in the absence of oxygen. This is reflected in its ability to inhibit the growth of other microorganisms that require oxygen, allowing it to dominate the environment. Shigella sonnei is often referred to as the most common cause of reported Shigella infections worldwide, with a global distribution. Its mode of transmission is primarily through the fecal-oral route, where infected individuals contaminate their environment with the bacterium, which is then ingested by others.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella sonnei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella sonnei
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella sonnei

Accession NumberCXEP00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4610 genes

Non-Coding Genes

148 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative dna-binding response regulatorEPS31_01715Not Available+371049 - 37177127657.5
duf1508 domain-containing proteinEPS31_01720Not Available+371951 - 37228311994.9
u32 family peptidaseEPS31_01725Not Available+372431 - 37379251145.1
AttlNot AvailableNot Available+373937 - 373966Not Available
Putative positive regulator of late gene transcriptionEPS31_01730Not Available-374066 - 3743209656.61
Tail proteinEPS31_01735Not Available-374366 - 37552942777.0
Tail proteinEPS31_01740Not Available-375529 - 37600817523.3
Tail length determinatorEPS31_01745Not Available-376023 - 37847086674.0
Putative phage tail proteinEPS31_01750Not Available-378463 - 3785824560.46
Tail proteinEPS31_01755Not Available-378615 - 3788909664.92

Displaying genes 1 – 10 of 24990 in total

Pathways

16 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

65 records
Metabolite IDMetabolite nameStructureCAS number
BASm0018533CDP-DG(14:0/16:0)C42H77N3O15P2Chemical structure of CDP-DG(14:0/16:0)NULL
Average926.032Da
Monoisotopic925.482992787Da
BASm0018559CDP-DG(16:1(9Z)/18:1(9Z))C46H81N3O15P2Chemical structure of CDP-DG(16:1(9Z)/18:1(9Z))NULL
Average978.108Da
Monoisotopic977.514292916Da
BASm00188811-Acyl-sn-glycero-3-phosphoethanolamine (N-C18:0)C23H48NO7PChemical structure of 1-Acyl-sn-glycero-3-phosphoethanolamine (N-C18:0)NULL
Average481.6035Da
Monoisotopic481.316839407Da
BASm00188831-Acyl-sn-glycero-3-phosphoglycerol (N-C12:0)C18H36O9PChemical structure of 1-Acyl-sn-glycero-3-phosphoglycerol (N-C12:0)NULL
Average427.4468Da
Monoisotopic427.209694262Da
BASm00188841-Acyl-sn-glycero-3-phosphoglycerol (N-C14:1)C20H38O9PChemical structure of 1-Acyl-sn-glycero-3-phosphoglycerol (N-C14:1)NULL
Average453.4841Da
Monoisotopic453.225344326Da
BASm00188851-Acyl-sn-glycero-3-phosphoglycerol (N-C16:0)C22H44O9PChemical structure of 1-Acyl-sn-glycero-3-phosphoglycerol (N-C16:0)NULL
Average483.5531Da
Monoisotopic483.272294518Da
BASm00188881-hexadecanoyl-sn-glycerol 3-phosphateC19H39O7PChemical structure of 1-hexadecanoyl-sn-glycerol 3-phosphateNULL
Average410.4825Da
Monoisotopic410.243340114Da
BASm00188942-Acyl-sn-glycero-3-phosphoethanolamine (N-C12:0)C17H36NO7PNot availableNULL
Average397.449Da
Monoisotopic397.222939501Da
BASm00188952-Acyl-sn-glycero-3-phosphoethanolamine (N-C14:0)C19H40NO7PNot availableNULL
Average425.503Da
Monoisotopic425.25423963Da
BASm00188972-Acyl-sn-glycero-3-phosphoethanolamine (N-C16:0)C21H44NO7PChemical structure of 2-Acyl-sn-glycero-3-phosphoethanolamine (N-C16:0)NULL
Average453.5503Da
Monoisotopic453.285539279Da

Displaying 21–30 of 65 metabolites