Shigella sonnei str. 75/02

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella sonnei str. 75/02 is a Gram-negative, rod-shaped bacterium that typically appears as single cells or in pairs. This strain optimally grows at a temperature of 37.0°C, which corresponds with the normal human body temperature, suggesting an adaptation to a host-associated habitat. As a chemoorganotroph, it derives energy from organic compounds, reflecting its reliance on a nutrient-rich environment often found within host organisms. Additionally, S. sonnei str. 75/02 is classified as a facultative anaerobe, indicating its capability to survive in both aerobic and anaerobic conditions, which may enhance its persistence in diverse microenvironments within the host. The ability of S. sonnei to thrive in the human gastrointestinal tract, coupled with its metabolic flexibility, positions it as a notable member of the enteric microbiota. Understanding these traits can provide insights into its survival strategies and potential interactions within the host, including its response to variations in oxygen availability and nutrient composition. This adaptability may contribute to its competitive edge in colonizing the gut, underscoring the importance of host-associated environments in shaping the physiological traits of pathogenic microbes like Shigella sonnei.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella sonnei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella sonnei str. 75/02
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella sonnei str. 75/02

Accession NumberNZ_CP019689.1

Gene Summary

Adenine Count

1199676 bp

Thymine Count

1197586 bp

Guanine Count

1249450 bp

Cytosine Count

1245005 bp

Genome Length

4891717 bp

Protein-coding Genes

4444 genes

Non-Coding Genes

549 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
galactose-1-epimeraseBZ172_RS18565Not Available-3451494 - 345253438154.4
galactokinaseBZ172_RS18570Not Available-3452528 - 345367641443.5
galactose-1-phosphate uridylyltransferaseBZ172_RS18575Not Available-3453680 - 345472639624.6
udp-glucose 4-epimerase galeBZ172_RS18580Not Available-3454736 - 345575237240.2
biotin synthase biobBZ172_RS18880Not Available+3500109 - 350114938650.3
8-amino-7-oxononanoate synthaseBZ172_RS18885Not Available+3501146 - 350230041705.9
malonyl-acp o-methyltransferase biocBZ172_RS18890Not Available+3502287 - 350304228276.8
dethiobiotin synthaseBZ172_RS18895Not Available+3503035 - 350371224121.9
excinuclease abc subunit uvrbBZ172_RS18900Not Available+3504291 - 350631276230.6
uridine diphosphate-n-acetylglucosamine-binding protein yvckBZ172_RS18910Not Available-3506504 - 350741232790.0

Displaying genes 3791 – 3800 of 5262 in total

Pathways

16 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites