Agrobacterium tumefaciens

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens is a gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found in various body sites of plants, including roots, stems, and leaves, across multiple species. As a chemoheterotroph, Agrobacterium tumefaciens relies on organic compounds for energy and carbon, obtaining these nutrients from its host plant or surrounding environment. This microbe is also an obligate aerobe, requiring oxygen to survive and grow, which is reflected in its ability to form colonies on agar plates in the presence of oxygen. The rod-shaped morphology of Agrobacterium tumefaciens allows it to effectively interact with plant cells, facilitating the transfer of DNA and subsequent manipulation of plant metabolism. The mesophilic temperature preference of this microbe enables it to thrive in a wide range of environments, from soil to plant tissues. Agrobacterium tumefaciens can infect a broad range of plant species, including dicots and some monocots, leading to the formation of crown galls or hairy roots. This microbe has been extensively studied for its ability to transfer DNA to plant cells, a process that has been harnessed for genetic engineering and biotechnology applications, making it a valuable tool for the development of novel plant varieties and the production of recombinant proteins.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens


Gene Summary

Adenine Count

1088044 bp

Thymine Count

1095114 bp

Guanine Count

1557979 bp

Cytosine Count

1541661 bp

Genome Length

5282798 bp

Protein-coding Genes

4870 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
serine o-acetyltransferaseA7J57_14095Not Available+2109255 - 211007929774.0
hypothetical proteinA7J57_14100Not Available+2110200 - 21104037847.3
cytochrome p450A7J57_14105Not Available-2110460 - 211180049971.9
tetr family transcriptional regulatorA7J57_14110Not Available+2111976 - 211262923929.6
formaldehyde dehydrogenase, glutathione-independentA7J57_14115Not Available-2112724 - 211391441855.5
aaa family atpaseA7J57_14120Not Available-2114074 - 211494632521.8
preprotein translocase subunit yajcA7J57_14125Not Available+2115154 - 211550112551.4
protein translocase subunit secdfA7J57_14130Not Available+2115582 - 211814692801.2
hypothetical proteinA7J57_14135Not Available+2118146 - 211853813827.7
phytoene synthaseA7J57_14140Not Available+2118562 - 211940730805.0

Displaying genes 1911 – 1920 of 16171 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

427 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da

Displaying 1–10 of 427 metabolites