Agrobacterium tumefaciens

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens is a gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found in various body sites of plants, including roots, stems, and leaves, across multiple species. As a chemoheterotroph, Agrobacterium tumefaciens relies on organic compounds for energy and carbon, obtaining these nutrients from its host plant or surrounding environment. This microbe is also an obligate aerobe, requiring oxygen to survive and grow, which is reflected in its ability to form colonies on agar plates in the presence of oxygen. The rod-shaped morphology of Agrobacterium tumefaciens allows it to effectively interact with plant cells, facilitating the transfer of DNA and subsequent manipulation of plant metabolism. The mesophilic temperature preference of this microbe enables it to thrive in a wide range of environments, from soil to plant tissues. Agrobacterium tumefaciens can infect a broad range of plant species, including dicots and some monocots, leading to the formation of crown galls or hairy roots. This microbe has been extensively studied for its ability to transfer DNA to plant cells, a process that has been harnessed for genetic engineering and biotechnology applications, making it a valuable tool for the development of novel plant varieties and the production of recombinant proteins.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens


Gene Summary

Adenine Count

1219213 bp

Thymine Count

1214018 bp

Guanine Count

1785206 bp

Cytosine Count

1785900 bp

Genome Length

6004337 bp

Protein-coding Genes

5553 genes

Non-Coding Genes

169 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
rhomboid family intramembrane serine proteaseA7J57_15635Not Available-329 - 110228123.9
atp:cob(i)alamin adenosyltransferaseA7J57_15640Not Available-1134 - 171221050.2
hypothetical proteinA7J57_15645Not Available-1714 - 19117111.38
short-chain dehydrogenaseA7J57_15650Not Available-1929 - 276230303.8
hypothetical proteinA7J57_15655Not Available+2939 - 385633107.9
trna glutamyl-q synthetaseA7J57_15660Not Available-3824 - 472333782.0
dna-3-methyladenine glycosidaseA7J57_15665Not Available+4772 - 541923101.1
cro/cl family transcriptional regulatorA7J57_15670Not Available-5435 - 685352491.0
methylmalonyl-coa carboxyltransferaseA7J57_15675Not Available+6972 - 850455875.9
glutathione-dependent disulfide-bond oxidoreductaseA7J57_15680Not Available+8607 - 950332918.9

Displaying genes 1 – 10 of 16171 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites