Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingorhabdaceae
Genus
Sphingorhabdus
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingorhabdaceae |
| Genus | Sphingorhabdus |
| Species | Sphingorhabdus lacus |
| Strain | IMCC1753 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingorhabdus lacus IMCC1753
Accession NumberCP035733.1
Gene Summary
Adenine Count
750717 bp
Thymine Count
750271 bp
Guanine Count
976518 bp
Cytosine Count
981137 bp
Genome Length
3458743 bp
Protein-coding Genes
3234 genes
Non-Coding Genes
50 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EUU25_07555 | Not Available | + | 1609044 - 1609340 | 9334.58 |
| duf1501 domain-containing protein | EUU25_07560 | Not Available | - | 1609415 - 1610848 | 49908.0 |
| duf1800 domain-containing protein | EUU25_07565 | Not Available | - | 1610860 - 1612689 | 65922.7 |
| lytic transglycosylase domain-containing protein | EUU25_07570 | O31608 | + | 1612885 - 1613496 | 21955.4 |
| type vi secretion protein | EUU25_07575 | Not Available | + | 1613510 - 1613827 | 10582.3 |
| type vi secretion protein | EUU25_07580 | Q9S3N1 | + | 1613831 - 1614115 | 10897.5 |
| virb4 family type iv secretion/conjugal transfer atpase | EUU25_07585 | Q9R2W4 | + | 1614119 - 1616545 | 88682.8 |
| hypothetical protein | EUU25_07590 | Not Available | + | 1616545 - 1617792 | 43546.5 |
| hypothetical protein | EUU25_07595 | Q6FYW2 | + | 1617789 - 1618601 | 29216.0 |
| trbi/virb10 family protein | EUU25_07600 | Q6G2B2 | + | 1618598 - 1619704 | 37285.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.