Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella zoogloeoides |
| Strain | 1-16M |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella zoogloeoides 1-16M
Accession NumberCP086610.1
Gene Summary
Adenine Count
713258 bp
Thymine Count
704761 bp
Guanine Count
1279043 bp
Cytosine Count
1294829 bp
Genome Length
3991891 bp
Protein-coding Genes
3764 genes
Non-Coding Genes
168 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hlyd family type i secretion periplasmic adaptor subunit | K8M09_13230 | Q7ANN5 | - | 2652863 - 2654161 | 47568.2 |
| hypothetical protein | K8M09_13235 | Not Available | - | 2654172 - 2655224 | 36737.4 |
| is481 family transposase | K8M09_13240 | Not Available | - | 2655213 - 2655629 | 14305.4 |
| type i secretion system permease/atpase | K8M09_13245 | Q7ANN4 | - | 2656070 - 2657851 | 62598.5 |
| heme peroxidase | K8M09_13250 | Q92626 | - | 2657920 - 2665287 | 254693.0 |
| histidine kinase | K8M09_13255 | P27668 | + | 2665574 - 2666986 | 51690.1 |
| response regulator transcription factor | K8M09_13260 | P9WMF8 | + | 2666983 - 2667618 | 22038.7 |
| lytic transglycosylase domain-containing protein | K8M09_13265 | O31608 | + | 2667919 - 2668782 | 31581.6 |
| hypothetical protein | K8M09_13270 | Not Available | + | 2669303 - 2670358 | 39556.8 |
| duf488 domain-containing protein | K8M09_13275 | Not Available | + | 2670436 - 2670732 | 10906.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.