Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella zoogloeoides |
| Strain | 1-16M |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella zoogloeoides 1-16M
Accession NumberCP086610.1
Gene Summary
Adenine Count
713258 bp
Thymine Count
704761 bp
Guanine Count
1279043 bp
Cytosine Count
1294829 bp
Genome Length
3991891 bp
Protein-coding Genes
3764 genes
Non-Coding Genes
168 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| high-affinity branched-chain amino acid abc transporter permease livm | K8M09_12830 | P21628 | - | 2561512 - 2562903 | 50243.6 |
| branched-chain amino acid abc transporter permease | K8M09_12835 | P0AEX8 | - | 2562908 - 2563810 | 32266.7 |
| sarcosine oxidase subunit gamma | K8M09_12840 | Q9AGP0 | - | 2564096 - 2564650 | 19323.0 |
| sarcosine oxidase subunit alpha family protein | K8M09_12845 | O87386 | - | 2564661 - 2567618 | 105175.0 |
| sarcosine oxidase subunit delta | K8M09_12850 | O87387 | - | 2567615 - 2567890 | 10266.1 |
| sarcosine oxidase subunit beta family protein | K8M09_12855 | O87388 | - | 2567899 - 2569149 | 45673.8 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | K8M09_12860 | P26264 | + | 2569301 - 2570110 | 28206.3 |
| efflux rnd transporter permease subunit | K8M09_12865 | D0ZEW1 | - | 2570144 - 2573224 | 112067.0 |
| efflux rnd transporter periplasmic adaptor subunit | K8M09_12870 | A6TBH3 | - | 2573221 - 2574294 | 37194.7 |
| efflux rnd transporter periplasmic adaptor subunit | K8M09_12875 | C5BHN6 | - | 2574291 - 2575361 | 37783.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.