Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella zoogloeoides |
| Strain | 1-16M |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
713258 bp
Thymine Count
704761 bp
Guanine Count
1279043 bp
Cytosine Count
1294829 bp
Genome Length
3991891 bp
Protein-coding Genes
3764 genes
Non-Coding Genes
168 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| is256 family transposase | K8M09_12480 | P60231 | - | 2499925 - 2501136 | 45122.4 |
| is481 family transposase | K8M09_12485 | Not Available | - | 2501287 - 2501544 | 9757.08 |
| is21 family transposase | K8M09_12490 | Q46087 | + | 2501662 - 2503188 | 58599.3 |
| is21-like element helper atpase istb | K8M09_12495 | P15026 | + | 2503178 - 2503990 | 29807.5 |
| hypothetical protein | K8M09_12500 | Not Available | - | 2504030 - 2504233 | 7798.97 |
| type ii toxin-antitoxin system yhav family toxin | K8M09_12505 | P64595 | - | 2504418 - 2504909 | 18323.8 |
| type ii toxin-antitoxin system prlf family antitoxin | K8M09_12510 | Q8FDB5 | - | 2504911 - 2505246 | 12166.5 |
| brna antitoxin family protein | K8M09_12515 | Not Available | + | 2505359 - 2505496 | 5136.18 |
| hypothetical protein | K8M09_12520 | Not Available | - | 2505952 - 2507148 | 44827.9 |
| hypothetical protein | K8M09_12525 | Not Available | - | 2507257 - 2508036 | 29637.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.