Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella zoogloeoides |
| Strain | 1-16M |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella zoogloeoides 1-16M
Accession NumberCP086610.1
Gene Summary
Adenine Count
713258 bp
Thymine Count
704761 bp
Guanine Count
1279043 bp
Cytosine Count
1294829 bp
Genome Length
3991891 bp
Protein-coding Genes
3764 genes
Non-Coding Genes
168 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 6,7-dimethyl-8-ribityllumazine synthase | K8M09_10730 | Q92NI1 | + | 2152539 - 2153015 | 16881.3 |
| luxr c-terminal-related transcriptional regulator | K8M09_10735 | P45785 | - | 2153115 - 2153912 | 30130.0 |
| abc transporter atp-binding protein | K8M09_10740 | Q1AS06 | + | 2154105 - 2155178 | 38215.3 |
| spermidine/putrescine abc transporter substrate-binding protein | K8M09_10745 | P0A2C8 | + | 2155218 - 2156384 | 42530.2 |
| abc transporter permease | K8M09_10750 | P45170 | + | 2156581 - 2157447 | 31123.4 |
| abc transporter permease | K8M09_10755 | P0AFL2 | + | 2157447 - 2158271 | 28916.2 |
| sdr family oxidoreductase | K8M09_10760 | P46331 | + | 2158273 - 2159034 | 26893.5 |
| l,d-transpeptidase | K8M09_10765 | P54539 | - | 2159090 - 2159803 | 25817.0 |
| ydei/ompd-associated family protein | K8M09_10770 | Not Available | + | 2159967 - 2160566 | 22802.4 |
| glycoside hydrolase family 25 protein | K8M09_10775 | Q8FFY2 | - | 2160583 - 2161605 | 38279.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.