Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Shinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Shinella |
| Species | Shinella zoogloeoides |
| Strain | 1-16M |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shinella zoogloeoides 1-16M
Accession NumberCP086610.1
Gene Summary
Adenine Count
713258 bp
Thymine Count
704761 bp
Guanine Count
1279043 bp
Cytosine Count
1294829 bp
Genome Length
3991891 bp
Protein-coding Genes
3764 genes
Non-Coding Genes
168 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | K8M09_05540 | P96680 | - | 1119681 - 1120598 | 32527.6 |
| arginyltransferase | K8M09_05545 | Q92KF8 | - | 1120617 - 1121381 | 29315.2 |
| rdd family protein | K8M09_05550 | Not Available | - | 1121482 - 1121946 | 17092.4 |
| hypothetical protein | K8M09_05555 | Not Available | + | 1122105 - 1122626 | 18793.4 |
| porphobilinogen synthase | K8M09_05560 | P45622 | - | 1122640 - 1123644 | 36216.5 |
| duf6163 family protein | K8M09_05565 | Not Available | + | 1123800 - 1124237 | 16047.2 |
| marr family winged helix-turn-helix transcriptional regulator | K8M09_05570 | P96440 | + | 1124368 - 1124880 | 19596.5 |
| l,d-transpeptidase family protein | K8M09_05575 | P22525 | + | 1125160 - 1126482 | 48754.9 |
| serine hydroxymethyltransferase | K8M09_05580 | Q8UG75 | + | 1126675 - 1127973 | 46665.9 |
| transcriptional regulator nrdr | K8M09_05585 | P58259 | + | 1127983 - 1128462 | 17964.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.