Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l-erythrulose-1-phosphate isomerase | GGADHKLB_00878 | Q2JZQ2 | + | 914798 - 915577 | 29200.0 |
| 2-keto-3-deoxygluconate permease | GGADHKLB_00879 | P65208 | + | 915665 - 916681 | 35678.9 |
| hypothetical protein | GGADHKLB_00880 | Q988B9 | + | 916746 - 917744 | 37710.5 |
| hypothetical protein | GGADHKLB_00881 | Q893M2 | + | 917829 - 919079 | 45448.9 |
| methylthioribulose-1-phosphate dehydratase | GGADHKLB_00882 | O67788 | + | 919105 - 919710 | 21687.0 |
| hth-type transcriptional regulator mcbr | GGADHKLB_00883 | O05494 | + | 919777 - 920451 | 26139.0 |
| hypothetical protein | GGADHKLB_00884 | Not Available | + | 920463 - 920699 | 9140.02 |
| hypothetical protein | GGADHKLB_00885 | P21340 | - | 920753 - 921256 | 19236.8 |
| hypothetical protein | GGADHKLB_00886 | Not Available | - | 921314 - 921604 | 11051.6 |
| putative abc transporter atp-binding protein | GGADHKLB_00887 | Q9WYI7 | + | 921718 - 922422 | 25479.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.