Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative d,d-dipeptide transport system permease protein ddpb | GGADHKLB_00828 | P77308 | + | 859347 - 860354 | 37068.8 |
| glutathione transport system permease protein gsid | GGADHKLB_00829 | Q8X6V6 | + | 860351 - 861187 | 30109.0 |
| putative dipeptidase pepe | GGADHKLB_00830 | P65811 | + | 861209 - 862300 | 40234.4 |
| oligopeptide transport atp-binding protein oppd | GGADHKLB_00831 | P42064 | + | 862316 - 863320 | 37337.7 |
| oligopeptide transport atp-binding protein oppf | GGADHKLB_00832 | P42065 | + | 863358 - 864371 | 38129.3 |
| cysteine desulfurase sufs | GGADHKLB_00833 | O27442 | + | 864374 - 865558 | 43505.5 |
| hypothetical protein | GGADHKLB_00834 | Q24YJ4 | + | 865561 - 866841 | 45979.6 |
| hth-type transcriptional repressor rspr | GGADHKLB_00835 | O05494 | + | 866952 - 867599 | 25464.9 |
| hypothetical protein | GGADHKLB_00836 | P54567 | + | 867699 - 868658 | 36394.3 |
| multidrug export protein mepa | GGADHKLB_00837 | Q49VC5 | + | 868773 - 870071 | 46428.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.