Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| arabinose metabolism transcriptional repressor | GGADHKLB_00379 | Q9S470 | - | 426008 - 427072 | 39668.6 |
| putative zinc-type alcohol dehydrogenase-like protein yjmd | GGADHKLB_00380 | O58389 | + | 427332 - 428375 | 37531.7 |
| hypothetical protein | GGADHKLB_00381 | P37505 | + | 428393 - 429130 | 26343.2 |
| nadh oxidase | GGADHKLB_00382 | P32382 | + | 429197 - 431128 | 70013.1 |
| autoinducer 2-binding protein lsrb | GGADHKLB_00383 | Q2PBL7 | + | 431413 - 432429 | 36109.1 |
| galactose/methyl galactoside import atp-binding protein mgla | GGADHKLB_00384 | Q8RD43 | + | 432510 - 433997 | 54798.6 |
| ribose import permease protein rbsc | GGADHKLB_00385 | P36948 | + | 433990 - 434952 | 34012.2 |
| d-allose transport system permease protein alsc | GGADHKLB_00386 | P36948 | + | 434957 - 435934 | 34565.3 |
| rhamnulokinase | GGADHKLB_00387 | Q8ESX1 | + | 435937 - 437364 | 53539.6 |
| 5-deoxy-d-ribulose 1-phosphate aldolase | GGADHKLB_00388 | P0DTQ0 | + | 437391 - 438032 | 23203.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.