Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | GGADHKLB_00349 | Not Available | + | 389117 - 389866 | 28637.7 |
| hth-type transcriptional repressor nanr | GGADHKLB_00350 | O07007 | - | 389924 - 390628 | 26782.7 |
| apulose-4-phosphate transketolase subunit a | GGADHKLB_00351 | Q58094 | + | 390894 - 391715 | 30041.9 |
| apulose-4-phosphate transketolase subunit b | GGADHKLB_00352 | Q58092 | + | 391715 - 392644 | 33054.5 |
| d-apionate oxidoisomerase | GGADHKLB_00353 | C0CMQ7 | + | 392677 - 393540 | 31193.6 |
| hydroxypyruvate reductase | GGADHKLB_00354 | C0CMQ8 | + | 393554 - 394522 | 35622.7 |
| dna polymerase iii subunit alpha | GGADHKLB_00355 | O51526 | + | 394701 - 398177 | 131368.0 |
| atp-dependent 6-phosphofructokinase | GGADHKLB_00356 | C3KV06 | + | 398246 - 399223 | 35113.3 |
| glutamate racemase 1 | GGADHKLB_00357 | P94556 | + | 399490 - 400311 | 29923.9 |
| hypothetical protein | GGADHKLB_00358 | Not Available | + | 400320 - 400766 | 16728.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.