Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative phosphatase | GGADHKLB_00319 | P54947 | - | 355739 - 356554 | 29896.1 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | GGADHKLB_00320 | Q2FWH4 | - | 356636 - 358006 | 49367.4 |
| d-alanine--d-alanine ligase | GGADHKLB_00321 | Q03EM9 | - | 358077 - 359147 | 39097.1 |
| nicotinate phosphoribosyltransferase pncb2 | GGADHKLB_00322 | O32090 | - | 359164 - 360621 | 54455.2 |
| hypothetical protein | GGADHKLB_00323 | Not Available | + | 360812 - 361405 | 22820.6 |
| hypothetical protein | GGADHKLB_00324 | P33333 | - | 361431 - 362165 | 28102.0 |
| hypothetical protein | GGADHKLB_00325 | Not Available | - | 362243 - 362788 | 20984.3 |
| hth-type transcriptional activator rhar | GGADHKLB_00326 | Q8X897 | - | 362785 - 364017 | 46387.2 |
| bile acid-coenzyme a ligase | GGADHKLB_00327 | P19409 | + | 364309 - 365832 | 56800.7 |
| 3-oxocholoyl-coa 4-desaturase | GGADHKLB_00328 | P19410 | + | 365880 - 367799 | 70277.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.