Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b | GGADHKLB_00279 | A9KJ27 | + | 308794 - 310212 | 52716.3 |
| hth-type transcriptional repressor nagr | GGADHKLB_00280 | O34817 | + | 310453 - 311181 | 27888.0 |
| bifunctional ribokinase/ribose-5-phosphate isomerase a | GGADHKLB_00281 | O59128 | + | 311192 - 312184 | 35733.8 |
| glutamine--fructose-6-phosphate aminotransferase (isomerizing) | GGADHKLB_00282 | Q5JH71 | + | 312168 - 313283 | 40942.8 |
| hypothetical protein | GGADHKLB_00283 | Q58481 | + | 313300 - 313710 | 14937.8 |
| hypothetical protein | GGADHKLB_00284 | Q1NZ26 | + | 313744 - 314550 | 28801.6 |
| protein-glutamate methylesterase/protein-glutamine glutaminase | GGADHKLB_00285 | O31517 | + | 314561 - 316123 | 59944.5 |
| hypothetical protein | GGADHKLB_00286 | O31516 | + | 316127 - 317860 | 65671.0 |
| ribose import atp-binding protein rbsa | GGADHKLB_00287 | Q0SSJ0 | + | 318018 - 319514 | 54827.8 |
| ribose import permease protein rbsc | GGADHKLB_00288 | Q1JUP6 | + | 319533 - 320468 | 33207.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.