Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 1,3-beta-galactosyl-n-acetylhexosamine phosphorylase | GGADHKLB_00249 | E8MF13 | - | 274108 - 276288 | 82781.0 |
| hypothetical protein | GGADHKLB_00250 | Not Available | + | 276510 - 277148 | 24432.3 |
| putative glucosamine-6-phosphate deaminase 2 | GGADHKLB_00251 | A9KIR8 | + | 277184 - 277918 | 26695.7 |
| hth-type transcriptional activator rhar | GGADHKLB_00252 | P43465 | - | 278001 - 278915 | 35358.6 |
| hypothetical protein | GGADHKLB_00253 | O32156 | + | 279124 - 280434 | 47409.2 |
| diacetylchitobiose uptake system permease protein ngcf | GGADHKLB_00254 | P94529 | + | 280544 - 281449 | 33945.6 |
| diacetylchitobiose uptake system permease protein ngcg | GGADHKLB_00255 | O50501 | + | 281465 - 282349 | 32639.9 |
| hypothetical protein | GGADHKLB_00256 | Not Available | + | 282395 - 283321 | 34705.2 |
| n-acetylhexosamine 1-kinase | GGADHKLB_00257 | E8MF12 | + | 283321 - 284439 | 42717.7 |
| udp-glucose 4-epimerase | GGADHKLB_00258 | P55180 | + | 284451 - 285470 | 37369.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.