Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cinnamoyl-coa:phenyllactate coa-transferase | GGADHKLB_03635 | Q93AM1 | - | 3828248 - 3829468 | 44969.4 |
| short-chain-enoyl-coa hydratase | GGADHKLB_03636 | P52046 | - | 3829489 - 3830292 | 29497.8 |
| 3-dehydro-scyllo-inosose hydrolase | GGADHKLB_03637 | Q9WYP4 | - | 3830320 - 3831435 | 41847.1 |
| transaldolase | GGADHKLB_03638 | P59955 | - | 3831459 - 3832526 | 40067.7 |
| 5-keto-l-gluconate epimerase | GGADHKLB_03639 | Q9WYP7 | - | 3832554 - 3833384 | 31244.6 |
| putative zinc-type alcohol dehydrogenase-like protein yjmd | GGADHKLB_03640 | Q06004 | - | 3833631 - 3834701 | 38432.0 |
| protein tsga | GGADHKLB_03641 | Q7CH99 | - | 3834698 - 3835885 | 42569.6 |
| scyllo-inosose 3-dehydrogenase | GGADHKLB_03642 | Q9WYP3 | - | 3835890 - 3837071 | 42938.5 |
| nadh oxidase | GGADHKLB_03643 | P32382 | - | 3837093 - 3839078 | 73024.0 |
| myo-inositol 2-dehydrogenase | GGADHKLB_03644 | O05389 | - | 3839108 - 3840136 | 38457.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.