Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pyruvate formate-lyase 1-activating enzyme | GGADHKLB_03575 | A0A069AMK2 | - | 3753044 - 3753784 | 28202.0 |
| choline trimethylamine-lyase | GGADHKLB_03576 | Q30W70 | - | 3753838 - 3756207 | 88988.3 |
| hypothetical protein | GGADHKLB_03577 | Not Available | - | 3756481 - 3756660 | 6867.28 |
| anaerobic ribonucleoside-triphosphate reductase-activating protein | GGADHKLB_03578 | P07075 | - | 3756660 - 3757154 | 18812.2 |
| anaerobic ribonucleoside-triphosphate reductase | GGADHKLB_03579 | P43752 | - | 3757224 - 3759413 | 83942.5 |
| 5-amino-6-(5-phospho-d-ribitylamino)uracil phosphatase yitu | GGADHKLB_03580 | Q45494 | - | 3759568 - 3760395 | 30789.6 |
| xylulose kinase | GGADHKLB_03581 | P21939 | - | 3760563 - 3762116 | 56727.2 |
| sorbitol dehydrogenase | GGADHKLB_03582 | Q06004 | + | 3762351 - 3763400 | 38149.1 |
| hypothetical protein | GGADHKLB_03583 | Not Available | - | 3763533 - 3764708 | 40617.3 |
| putative 2-hydroxyacid dehydrogenase yoad | GGADHKLB_03584 | O27051 | - | 3764733 - 3765782 | 38311.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.