Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glucitol operon repressor | GGADHKLB_03315 | P76034 | + | 3467014 - 3467760 | 27658.0 |
| fructose-6-phosphate aldolase 1 | GGADHKLB_03316 | B8ZKS3 | + | 3467804 - 3468481 | 24996.0 |
| hypothetical protein | GGADHKLB_03317 | O31761 | - | 3468547 - 3469566 | 38888.9 |
| choline trimethylamine-lyase | GGADHKLB_03318 | P32674 | - | 3469601 - 3471985 | 89291.2 |
| 4-hydroxyphenylacetate decarboxylase activating enzyme | GGADHKLB_03319 | Q18CP3 | - | 3472003 - 3472869 | 33111.4 |
| xylulose kinase | GGADHKLB_03320 | P39211 | - | 3472873 - 3474363 | 54858.7 |
| d-arabitol-phosphate dehydrogenase | GGADHKLB_03321 | Q8KQL2 | - | 3474490 - 3475509 | 36856.5 |
| n-acetylmannosamine kinase | GGADHKLB_03322 | P94490 | - | 3475536 - 3476642 | 41305.9 |
| hypothetical protein | GGADHKLB_03323 | Q3KFL0 | - | 3476721 - 3477212 | 18198.1 |
| ribose import permease protein rbsc | GGADHKLB_03324 | P36948 | - | 3477306 - 3478253 | 33601.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.