Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| xylulose kinase | GGADHKLB_03305 | P35850 | - | 3455125 - 3456645 | 55326.0 |
| d-tagatose-1,6-bisphosphate aldolase subunit gaty | GGADHKLB_03306 | A8AQ28 | - | 3456663 - 3457514 | 30351.6 |
| putative hth-type transcriptional regulator ydjf | GGADHKLB_03307 | P77721 | - | 3457543 - 3458316 | 29130.2 |
| 3-oxo-tetronate 4-phosphate decarboxylase | GGADHKLB_03308 | Q6LY06 | - | 3458350 - 3459024 | 25058.4 |
| xylulose kinase | GGADHKLB_03309 | P39211 | - | 3459325 - 3460863 | 57069.5 |
| aldo/keto reductase | GGADHKLB_03310 | Q6AZW2 | - | 3460907 - 3461926 | 38711.5 |
| d-psicose 3-epimerase | GGADHKLB_03311 | B8I944 | - | 3462053 - 3462922 | 32954.1 |
| rhamnulokinase | GGADHKLB_03312 | Q9KCM0 | - | 3462935 - 3464347 | 53028.1 |
| d-tagatose 3-epimerase | GGADHKLB_03313 | O50580 | - | 3464382 - 3465269 | 33614.0 |
| xylulose kinase | GGADHKLB_03314 | P35850 | - | 3465302 - 3466819 | 56156.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.