Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor rpod | GGADHKLB_03275 | P33452 | - | 3425314 - 3426015 | 26470.3 |
| sporulation-specific n-acetylmuramoyl-l-alanine amidase | GGADHKLB_03276 | Q06320 | - | 3426148 - 3426909 | 28349.4 |
| hypothetical protein | GGADHKLB_03277 | Not Available | - | 3426975 - 3428132 | 44147.8 |
| peptidoglycan o-acetyltransferase | GGADHKLB_03278 | Q51392 | - | 3428145 - 3429551 | 53776.8 |
| hypothetical protein | GGADHKLB_03279 | Not Available | - | 3429563 - 3430060 | 18742.8 |
| hypothetical protein | GGADHKLB_03280 | Not Available | - | 3430057 - 3430851 | 29690.1 |
| hypothetical protein | GGADHKLB_03281 | Not Available | + | 3430963 - 3431133 | 6798.2 |
| ribose-5-p isomerase b | GGADHKLB_03282 | Q92EU5 | - | 3431250 - 3431711 | 16676.3 |
| pep-dependent dihydroxyacetone kinase, adp-binding subunit dhal | GGADHKLB_03283 | P45620 | - | 3431711 - 3432367 | 23307.1 |
| pts-dependent dihydroxyacetone kinase 2, dihydroxyacetone-binding subunit dhak | GGADHKLB_03284 | Q92EU2 | - | 3432379 - 3433374 | 35067.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.