Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional repressor purr | GGADHKLB_03053 | P39265 | - | 3214873 - 3215976 | 38805.2 |
| ribokinase | GGADHKLB_03054 | P0A9J7 | - | 3216016 - 3216960 | 34475.2 |
| ribose import permease protein rbsc | GGADHKLB_03055 | P0AGI3 | - | 3216963 - 3217910 | 33286.1 |
| fructose import atp-binding protein frca | GGADHKLB_03056 | P0DTT6 | - | 3217928 - 3218683 | 27109.1 |
| d-proline reductase proprotein prda | GGADHKLB_03057 | Q9Z4P6 | + | 3218978 - 3219382 | 13957.5 |
| l-ribulose-5-phosphate 4-epimerase ulaf | GGADHKLB_03058 | Q9S469 | - | 3219592 - 3220281 | 25424.1 |
| l-ribulose-5-phosphate 3-epimerase ulae | GGADHKLB_03059 | A7ZV68 | - | 3220250 - 3221155 | 34001.7 |
| hypothetical protein | GGADHKLB_03060 | Not Available | - | 3221168 - 3222223 | 39449.0 |
| putative l-ascorbate-6-phosphate lactonase ulag | GGADHKLB_03061 | B5R9D9 | - | 3222236 - 3223339 | 42035.9 |
| glycerol kinase | GGADHKLB_03062 | C5A1M3 | - | 3223342 - 3224856 | 56621.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.