Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | GGADHKLB_02952 | P94412 | - | 3108366 - 3109895 | 57271.4 |
| accessory gene regulator protein b | GGADHKLB_02953 | Q92FR2 | - | 3110088 - 3110651 | 21163.7 |
| hypothetical protein | GGADHKLB_02954 | Not Available | - | 3110644 - 3110796 | 5659.04 |
| hypothetical protein | GGADHKLB_02955 | Not Available | - | 3111047 - 3112300 | 48450.6 |
| transcriptional regulatory protein ypdb | GGADHKLB_02956 | Q81JL3 | - | 3112337 - 3113056 | 28358.0 |
| hypothetical protein | GGADHKLB_02957 | Not Available | - | 3113060 - 3114877 | 69175.4 |
| hth-type transcriptional activator rhar | GGADHKLB_02958 | O32071 | + | 3115056 - 3117134 | 80185.2 |
| cyclodextrin-binding protein | GGADHKLB_02959 | Q578M8 | + | 3117420 - 3118703 | 47499.8 |
| melibiose/raffinose/stachyose import permease protein meld | GGADHKLB_02960 | O32155 | + | 3118723 - 3119625 | 33525.0 |
| lactose transport system permease protein lacg | GGADHKLB_02961 | Q9KEE9 | + | 3119625 - 3120443 | 30835.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.