Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein ybjj | GGADHKLB_02862 | Q08280 | + | 3015251 - 3016423 | 42611.6 |
| hypothetical protein | GGADHKLB_02863 | Not Available | - | 3016671 - 3018548 | 72011.5 |
| putative aminotransferase | GGADHKLB_02864 | A0R5R7 | + | 3018685 - 3019941 | 46294.5 |
| glutamate dehydrogenase | GGADHKLB_02865 | P96110 | + | 3019968 - 3021230 | 45325.7 |
| hth-type transcriptional regulator cynr | GGADHKLB_02866 | P94387 | + | 3021401 - 3022348 | 35836.8 |
| cocaine esterase | GGADHKLB_02867 | Q9L9D7 | - | 3022397 - 3024187 | 69478.5 |
| cocaine esterase | GGADHKLB_02868 | Q9L9D7 | - | 3024202 - 3025938 | 66623.2 |
| kynureninase | GGADHKLB_02869 | A4IT57 | - | 3026011 - 3027264 | 46662.8 |
| hypothetical protein | GGADHKLB_02870 | O07576 | - | 3027266 - 3028648 | 49553.9 |
| kynurenine formamidase | GGADHKLB_02871 | Q81PP9 | - | 3028676 - 3029386 | 26390.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.