Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | GGADHKLB_02842 | A6TKP1 | + | 2995248 - 2995562 | 11301.8 |
| nicotinamide-nucleotide adenylyltransferase | GGADHKLB_02843 | Q5IW36 | - | 2995630 - 2996217 | 23175.0 |
| dead-box atp-dependent rna helicase csha | GGADHKLB_02844 | Q5L3G9 | - | 2996313 - 2997893 | 59031.9 |
| hypothetical protein | GGADHKLB_02845 | P96616 | - | 2997974 - 2999473 | 55287.6 |
| hypothetical protein | GGADHKLB_02846 | P96615 | - | 2999451 - 2999948 | 18815.0 |
| ecf rna polymerase sigma factor sigm | GGADHKLB_02847 | O07627 | + | 3000102 - 3000596 | 19062.0 |
| hypothetical protein | GGADHKLB_02848 | Not Available | + | 3000597 - 3001397 | 31130.9 |
| hypothetical protein | GGADHKLB_02849 | Q5SIL0 | + | 3001488 - 3002162 | 25328.7 |
| hth-type transcriptional activator tipa | GGADHKLB_02850 | P0A4T8 | + | 3002233 - 3002997 | 29314.2 |
| thioredoxin | GGADHKLB_02851 | P0A617 | - | 3003124 - 3003432 | 11475.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.