Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trans-4-hydroxy-l-proline dehydratase | GGADHKLB_02822 | A0A031WDE4 | - | 2973781 - 2976156 | 90078.1 |
| benzylsuccinate synthase activating enzyme | GGADHKLB_02823 | A0A069AMK2 | - | 2976161 - 2977069 | 34172.9 |
| hypothetical protein | GGADHKLB_02824 | Not Available | - | 2977204 - 2978148 | 36437.0 |
| hypothetical protein | GGADHKLB_02825 | P29941 | - | 2978202 - 2978738 | 20622.6 |
| multidrug resistance protein mdtb | GGADHKLB_02826 | O31501 | - | 2978757 - 2982572 | 136731.0 |
| 3-oxoacyl-[acyl-carrier-protein] reductase fabg | GGADHKLB_02827 | P51831 | + | 2982758 - 2983492 | 26352.5 |
| exodeoxyribonuclease | GGADHKLB_02828 | P37454 | - | 2983546 - 2984298 | 29173.4 |
| trna pseudouridine synthase a | GGADHKLB_02829 | Q45557 | - | 2984333 - 2985067 | 28092.9 |
| transcriptional repressor nrdr | GGADHKLB_02830 | A9KNG9 | - | 2985221 - 2985670 | 17441.0 |
| putative sporulation protein ylmc | GGADHKLB_02831 | O31725 | - | 2985756 - 2985995 | 8889.07 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.