Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | GGADHKLB_01158 | Not Available | - | 1183466 - 1183882 | 16345.5 |
| hth-type transcriptional activator rhas | GGADHKLB_01159 | P0A9E4 | + | 1184090 - 1184986 | 34836.5 |
| hypothetical protein | GGADHKLB_01160 | P25152 | + | 1185066 - 1186229 | 42841.1 |
| hypothetical protein | GGADHKLB_01161 | Not Available | + | 1186737 - 1187570 | 32081.6 |
| cysteine/o-acetylserine efflux protein | GGADHKLB_01162 | A6T515 | + | 1187685 - 1188272 | 21779.3 |
| Tmrna,resume consensus sequence (at 83): tataaacgcagacaatag | Not Available | Not Available | + | 1188367 - 1188715 | Not Available |
| hypothetical protein | GGADHKLB_01164 | Q97FE0 | - | 1188765 - 1189295 | 20141.0 |
| hypothetical protein | GGADHKLB_01165 | Not Available | + | 1189482 - 1189919 | 16827.2 |
| ecf rna polymerase sigma factor sigm | GGADHKLB_01166 | O07582 | + | 1190014 - 1190322 | 11890.6 |
| hypothetical protein | GGADHKLB_01167 | Not Available | + | 1190339 - 1191529 | 44845.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.