Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnoclostridium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Lachnospirales |
| Family | Lachnospiraceae |
| Genus | Lachnoclostridium |
| Species | [Clostridium] scindens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | cecum; colon; distal intestine; feces; GI tract; gut; gut microbiome; ileum; large intestine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Chains; Chains, Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Clostridium scindens
Accession NumberCP113781.1
Gene Summary
Adenine Count
1027942 bp
Thymine Count
1059284 bp
Guanine Count
939860 bp
Cytosine Count
955966 bp
Genome Length
3983052 bp
Protein-coding Genes
3637 genes
Non-Coding Genes
144 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin-type protein napf | GGADHKLB_01038 | Not Available | + | 1066080 - 1066871 | 29991.4 |
| glycerate 2-kinase | GGADHKLB_01039 | P42100 | - | 1066896 - 1068023 | 39025.8 |
| hypothetical protein | GGADHKLB_01040 | P94536 | - | 1068173 - 1069282 | 41555.0 |
| hypothetical protein | GGADHKLB_01041 | Q58483 | + | 1069453 - 1070148 | 26112.4 |
| hth-type transcriptional activator cmpr | GGADHKLB_01042 | A0T0V5 | - | 1070102 - 1071010 | 35228.9 |
| putative d,d-dipeptide-binding periplasmic protein ddpa | GGADHKLB_01043 | P76128 | + | 1071200 - 1072855 | 60655.4 |
| putative d,d-dipeptide transport system permease protein ddpb | GGADHKLB_01044 | P77308 | + | 1072887 - 1073909 | 37460.7 |
| putative d,d-dipeptide transport system permease protein ddpc | GGADHKLB_01045 | P42063 | + | 1073922 - 1074785 | 31441.3 |
| oligopeptide transport atp-binding protein oppd | GGADHKLB_01046 | Q53193 | + | 1074785 - 1075774 | 36058.8 |
| oligopeptide transport atp-binding protein oppf | GGADHKLB_01047 | P42065 | + | 1075771 - 1076766 | 36752.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.