Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxydohydrogena |
| Strain | Z-1062 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas carboxydohydrogena Z-1062
Accession NumberCP113162.1
Gene Summary
Adenine Count
614120 bp
Thymine Count
614391 bp
Guanine Count
1021703 bp
Cytosine Count
1021226 bp
Genome Length
3271440 bp
Protein-coding Genes
3090 genes
Non-Coding Genes
71 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | AFIC_002640 | Not Available | - | 2734274 - 2734603 | 12038.9 |
| hydrogenase expression/formation protein hype | AFIC_002641 | P26412 | - | 2734769 - 2735836 | 36763.9 |
| hydrogenase formation protein hypd | AFIC_002642 | P26411 | - | 2735833 - 2736966 | 41575.4 |
| sis domain-containing protein | AFIC_002643 | Q9AGY7 | - | 2736963 - 2737655 | 23905.6 |
| hypc/hybg/hupf family hydrogenase formation chaperone | AFIC_002644 | P40428 | - | 2737665 - 2737946 | 10077.1 |
| carbamoyltransferase hypf | AFIC_002645 | Q02987 | - | 2737950 - 2740358 | 85751.3 |
| atp-binding protein | AFIC_002646 | Q9HWA7 | + | 2741039 - 2742376 | 49183.5 |
| hupu protein | AFIC_002647 | P12943 | + | 2742373 - 2743383 | 36026.9 |
| nickel-dependent hydrogenase large subunit | AFIC_002648 | P13065 | + | 2743380 - 2744834 | 52515.3 |
| hydrogenase small subunit | AFIC_002649 | O33405 | + | 2745048 - 2746151 | 40119.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
