Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxydohydrogena |
| Strain | Z-1062 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas carboxydohydrogena Z-1062
Accession NumberCP113162.1
Gene Summary
Adenine Count
614120 bp
Thymine Count
614391 bp
Guanine Count
1021703 bp
Cytosine Count
1021226 bp
Genome Length
3271440 bp
Protein-coding Genes
3090 genes
Non-Coding Genes
71 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent helicase hrpb | AFIC_000528 | P37024 | + | 556479 - 558959 | 89382.1 |
| tigr02281 family clan aa aspartic protease | AFIC_000529 | P29938 | + | 559132 - 559662 | 18980.9 |
| class i sam-dependent methyltransferase | AFIC_000530 | Q497C3 | - | 559675 - 560277 | 21863.2 |
| phosphomannomutase/phosphoglucomutase | AFIC_000531 | Q88C93 | + | 560422 - 561921 | 54531.6 |
| lysr family transcriptional regulator | AFIC_000532 | P0ACR6 | - | 561929 - 562819 | 31865.4 |
| yeih family protein | AFIC_000533 | Q6N8Y1 | - | 562828 - 563865 | 36029.0 |
| lrp/asnc family transcriptional regulator | AFIC_000534 | P0ACJ7 | - | 564053 - 564568 | 18804.9 |
| sugar kinase | AFIC_000535 | P32143 | - | 564653 - 565591 | 33447.2 |
| hit family protein | AFIC_000536 | P9WMK8 | - | 565699 - 566115 | 15519.8 |
| Ncrna_class:srp_rna | Not Available | Not Available | + | 566302 - 566398 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
