Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxydohydrogena |
| Strain | Z-1062 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas carboxydohydrogena Z-1062
Accession NumberCP113162.1
Gene Summary
Adenine Count
614120 bp
Thymine Count
614391 bp
Guanine Count
1021703 bp
Cytosine Count
1021226 bp
Genome Length
3271440 bp
Protein-coding Genes
3090 genes
Non-Coding Genes
71 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | AFIC_000438 | Not Available | - | 458134 - 459192 | 39703.7 |
| cbass effector endonuclease nucc | AFIC_000439 | P0DTF8 | - | 459248 - 459973 | 26830.9 |
| cbass oligonucleotide cyclase | AFIC_000440 | P0DTF7 | - | 460006 - 460902 | 34019.0 |
| horma domain containing protein | AFIC_000441 | P0DTF6 | - | 460902 - 461402 | 18717.1 |
| hypothetical protein | AFIC_000442 | P0DTF5 | - | 461399 - 461875 | 16640.3 |
| aaa family atpase | AFIC_000443 | P0DTF4 | - | 461872 - 462795 | 32679.5 |
| helix-turn-helix domain-containing protein | AFIC_000444 | O27383 | + | 462955 - 463308 | 12443.9 |
| imma/irre family metallo-endopeptidase | AFIC_000445 | Not Available | + | 463305 - 463826 | 19185.1 |
| exonuclease domain-containing protein | AFIC_000446 | P04995 | + | 463842 - 465254 | 52795.0 |
| hypothetical protein | AFIC_000447 | Not Available | + | 465291 - 465935 | 23764.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
