Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxydohydrogena |
| Strain | Z-1062 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas carboxydohydrogena Z-1062
Accession NumberCP113162.1
Gene Summary
Adenine Count
614120 bp
Thymine Count
614391 bp
Guanine Count
1021703 bp
Cytosine Count
1021226 bp
Genome Length
3271440 bp
Protein-coding Genes
3090 genes
Non-Coding Genes
71 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| peptidylprolyl isomerase | AFIC_000388 | Q7WCX5 | - | 401386 - 402279 | 32078.6 |
| preprotein translocase subunit seca | AFIC_000389 | B6JAC3 | + | 402636 - 405470 | 106116.0 |
| murein l,d-transpeptidase | AFIC_000390 | P0AAA0 | - | 405545 - 406972 | 51416.0 |
| acetyl-coa carboxylase carboxyltransferase subunit alpha | AFIC_000391 | B6JAC0 | - | 407165 - 408127 | 34526.3 |
| site-specific tyrosine recombinase xerd | AFIC_000392 | Q89XW5 | - | 408243 - 409202 | 35365.5 |
| hypothetical protein | AFIC_000393 | Not Available | - | 409216 - 409362 | 5388.78 |
| shikimate kinase | AFIC_000394 | Q6NCG8 | + | 409515 - 410153 | 23173.9 |
| 3-dehydroquinate synthase | AFIC_000395 | Q89XW8 | + | 410165 - 411337 | 41226.6 |
| hemolysin family protein | AFIC_000396 | O05241 | + | 411334 - 412689 | 50024.8 |
| hypothetical protein | AFIC_000397 | Not Available | + | 412733 - 412990 | 9502.34 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
