Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxydohydrogena |
| Strain | Z-1062 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas carboxydohydrogena Z-1062
Accession NumberCP113162.1
Gene Summary
Adenine Count
614120 bp
Thymine Count
614391 bp
Guanine Count
1021703 bp
Cytosine Count
1021226 bp
Genome Length
3271440 bp
Protein-coding Genes
3090 genes
Non-Coding Genes
71 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nucleotidyl transferase abieii/abigii toxin family protein | AFIC_003010 | Not Available | - | 3106113 - 3107177 | 38572.7 |
| duf6088 family protein | AFIC_003011 | Not Available | - | 3107174 - 3107929 | 28097.0 |
| site-specific dna-methyltransferase | AFIC_003012 | P40814 | + | 3108382 - 3110187 | 68551.7 |
| dead/deah box helicase family protein | AFIC_003013 | Not Available | + | 3110192 - 3112792 | 97031.1 |
| arm dna-binding domain-containing protein | AFIC_003014 | P76542 | + | 3113067 - 3113609 | 20510.9 |
| site-specific integrase | AFIC_003015 | P32053 | + | 3113694 - 3114266 | 21713.0 |
| helix-turn-helix domain-containing protein | AFIC_003016 | Not Available | + | 3114349 - 3114573 | 8354.02 |
| hypothetical protein | AFIC_003017 | Not Available | + | 3114585 - 3114845 | 10128.1 |
| hypothetical protein | AFIC_003018 | Not Available | - | 3115024 - 3115941 | 35412.4 |
| class i sam-dependent methyltransferase | AFIC_003019 | Not Available | - | 3116380 - 3117429 | 38657.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
