Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxydohydrogena |
| Strain | Z-1062 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas carboxydohydrogena Z-1062
Accession NumberCP113162.1
Gene Summary
Adenine Count
614120 bp
Thymine Count
614391 bp
Guanine Count
1021703 bp
Cytosine Count
1021226 bp
Genome Length
3271440 bp
Protein-coding Genes
3090 genes
Non-Coding Genes
71 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf488 domain-containing protein | AFIC_002910 | P76243 | - | 3004492 - 3004863 | 14245.1 |
| tonb-dependent siderophore receptor | AFIC_002911 | Q1REC0 | - | 3005045 - 3007324 | 83532.8 |
| response regulator transcription factor | AFIC_002912 | Q9HV32 | + | 3007604 - 3008263 | 24729.9 |
| hamp domain-containing histidine kinase | AFIC_002913 | P40719 | + | 3008260 - 3009573 | 48273.1 |
| mfs transporter | AFIC_002914 | P37482 | - | 3009578 - 3010735 | 40699.9 |
| tetr/acrr family transcriptional regulator | AFIC_002915 | P42105 | - | 3010850 - 3011428 | 21744.1 |
| nuclear transport factor 2 family protein | AFIC_002916 | Not Available | - | 3011461 - 3011925 | 18160.4 |
| dmt family transporter | AFIC_002917 | P96668 | + | 3012042 - 3012965 | 32119.1 |
| osmc family protein | AFIC_002918 | P0C0L2 | - | 3012976 - 3013407 | 14942.8 |
| hypothetical protein | AFIC_002919 | Not Available | - | 3013449 - 3014528 | 39213.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
