Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tlpa family protein disulfide reductase | IZT61_04710 | Q73B22 | + | 1182954 - 1183418 | 17695.6 |
| hypothetical protein | IZT61_04715 | Not Available | + | 1183675 - 1184097 | 15949.7 |
| duf3606 domain-containing protein | IZT61_04720 | Not Available | - | 1184653 - 1184835 | 6806.84 |
| hypothetical protein | IZT61_04725 | Not Available | - | 1185349 - 1185798 | 17390.3 |
| hypothetical protein | IZT61_04730 | Not Available | + | 1186635 - 1187012 | 14098.1 |
| duf202 domain-containing protein | IZT61_04735 | Not Available | + | 1187269 - 1187652 | 13981.4 |
| ghkl domain-containing protein | IZT61_04740 | Q45614 | - | 1188562 - 1189749 | 45730.1 |
| dmt family transporter | IZT61_04745 | P96697 | - | 1190409 - 1190932 | 19332.3 |
| sterol desaturase family protein | IZT61_04750 | P68434 | - | 1191551 - 1192579 | 40388.1 |
| glycoside hydrolase family 15 protein | IZT61_04755 | Q10211 | - | 1192737 - 1194578 | 69995.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.